Jiří Friml Lab

Research focus

​What are the mechanisms underlying differential distribution of the plant hormone auxin within plant tissues, and how do these processes regulate plant growth and architecture?

Plant development is characterized by a pronounced adaptability to different environmental conditions. Extensive post-embryonic development, involving the activity of permanent stem cell populations (meristems), de novo organ formation and changes in growth direction, provides plants with exceptional flexibility in terms of growth and survival. Differential distribution (gradients) of the plant signaling molecule auxin underlies many of these developmental events. These gradients are established and maintained by a directional, intercellular auxin transport called polar auxin transport. Polar auxin transport provides positional and directional information for many aspects of plant development.

Classical models postulate that polar auxin transport requires the activity of auxin influx and efflux carriers. Molecular genetic studies in the model plant Arabidopsis thaliana have identified AUX1/LAX and PIN gene families coding for components of influx and efflux carriers respectively. Studies in cultured plant, mammalian and yeast cells show that PINs mediate auxin efflux from cells. The PIN gene family in Arabidopsis consists of eight members, and orthologs have been found in most other plant species. Genetic studies have revealed the roles of the different PIN proteins in the establishment of auxin gradients mediating multiple developmental processes, including apical organogenesis and phyllotaxis, gravitropic and phototropic growth, root meristem patterning, vascular tissue development and embryonic axis formation.

The key feature of polar auxin transport, namely its controlled directionality, was postulated to result from the asymmetric, subcellular localization of the efflux carriers. Remarkably, as predicted, PIN proteins display an asymmetric localization within auxin transport competent cells and determine the direction of auxin flow. The decision on PIN polar targeting depends on their phosphorylation regulated by PINOID kinase and PP2AA phosphatase. As cellular levels (and thus the activity of PINOID) are dependent on auxin itself, this provides a possible feedback regulation between auxin and PIN polarity.
Polar targeting of PIN proteins is related to their continuous subcellular movement between endosomes and the plasma membrane. PIN internalization occurs by the clathrin-dependent endocytosis mechanism; its recycling back to the plasma membrane requires ARF GEF regulators of vesicle trafficking. The constitutive cycling of auxin transport components provides an entry point for internal and external signals, which in this manner can rapidly modulate PIN polarity. Dynamic changes of PIN polarity in response to environmental and developmental signals have been observed to divert auxin flow during gravitropic response, embryogenesis, post-embryonic organogenesis and tissue regeneration. In addition, auxin itself can influence the subcellular distribution of plasma membrane proteins, including PINs, by inhibiting their endocytosis, and thus regulate activity of its efflux.

These data show that PIN proteins are key components of an intricate auxin distribution network that mediates local auxin gradients in multiple developmental processes.
It also represents a unique model system to study the functional link between basic cellular processes, such as endocytosis or cell polarity establishment, and their developmental outcome at the level of the multi-cellular plant organism.

Publications

PIN Polarity Maintenance by the Cell Wall in ArabidopsisFeraru E, Feraru M, Kleine-Vehn J, Martiniere A, Mouille G, Vanneste S, Vernhettes S, Runions J, Friml JCURRENT BIOLOGY, 21, 338-43, 2011
ABP1 Mediates Auxin Inhibition of Clathrin-Dependent Endocytosis in ArabidopsisRobert S, Kleine-Vehn J, Barbez E, Sauer M, Paciorek T, Baster P, Vanneste S, Zhang J, Simon S, Covanová M, Hayashi K, Dhonukshe P, Yang Z, Bednarek S, Jones A, Luschnig C, Aniento F, Zazimalová E, Friml JCELL, 143, 111-21, 2010
Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporterMravec J, Skupa P, Bailly A, Hoyerová K, Krecek P, Bielach A, Petrásek J, Zhang J, Gaykova V, Stierhof Y, Dobrev P, Schwarzerová K, Rolcik J, Seifertová D, Luschnig C, Benková E, Zazimalová E, Geisler M, Friml JNATURE, 459, 1136-40, 2009
Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisionsDhonukshe P, Tanaka H, Goh T, Ebine K, Mahonen A, Prasad K, Blilou I, Geldner N, Xu J, Uemura T, Chory J, Ueda T, Nakano A, Scheres B, Friml JNATURE, 456, 962-6, 2008
Antagonistic Regulation of PIN Phosphorylation by PP2A and PINOID Directs Auxin FluxMichniewicz M, Zago M, Abas L, Weijers D, Schweighofer A, Meskiene I, Heisler M, Ohno C, Zhang J, Huang F, Schwab R, Weigel D, Meyerowitz E, Luschnig C, Offringa R, Friml JCELL, 130, 1044-56, 2007

News

That is why plants grow towards the light!

16/04/2012 - Have you ever wondered why stems grow upwards and roots downwards? Why plants always seem to turn towards the light and climbing plants run up the trellis rather than down?

Again high ERC recognition for VIB

15/09/2011 - The European Research Council's fourth call for proposals resulted once again in three VIB applicants being recognized as excellent researchers: Mo Lamkanfi, Jiří Friml, and Matthew Holt.

Incredibly versatile plant hormone auxin suppresses clathrin-dependent endocytosis

01/10/2010 - Jiří Friml and his colleagues from the VIB Department of Systems Biology, UGent, have published an article in Cell, demonstrating that clathrin-mediated endocytosis in the model plant Arabidopsis is regulated by the plant hormone auxin.

VIB-UGent scientist Jiří Friml receives €750.000 Körber European Science Award 2010 for research on plant hormones

07/06/2010 - Scientist Jiří Friml from VIB and Ghent University, both in Flanders, Belgium, is this year’s laureate of the Körber European Science Award, worth 750 000 euro.

Combating infection of crops by nematodes is soon to improve

16/01/2009 - Scientists from Ghent University and VIB have succeeded in showing how nematodes are able to manipulate the transport of the plant hormone auxin in order to force the plant to produce food for them.

Scientists unveil mechanism for ‘up and down’ in plants

27/10/2008 - Scientists unveil mechanism for ‘up and down’ in plants

Jirí Friml

Jirí Friml

Research area(s)

Model organism(s)

Bio

​Ph.D.: Univ. of Cologne, Cologne, Germany, 2000
Ph.D.: Masaryk Univ., Brno, Czech Republic, 2002
Post-doc.: Univ. of Tübingen, Tübingen, Germany, 2001-02
Group leader: Univ. of Tübingen, Tübingen, Germany, 2002-07
Full Professor: Univ. of Göttingen, Göttingen, Germany, 2007
VIB Group leader since 2007
EMBO Member since 2010

Contact Info

VIB Department of Plant Systems BiologyUGentVIB Research Building FSVMTechnologiepark 927 9052 GENTRoute description